Bio::Tools::Prepeat

Finding repeats in protein sequences.

Bio::Tools::Analysis::Protein::Scansite

Wrapper around the Scansite server

Bio::Tools::OddCodes

Object holding alternative alphabet coding for one protein sequence.

make_mrna_protein

Convert an input mRNA/cDNA sequence into protein.

Chemistry::File::PDB

Protein Data Bank file format reader/writer.

Bio::Tools::Analysis::Protein::ELM

This module is a wrapper around the ELM server (http://elm.eu.org/) which predicts short functional motifs on amino acid sequences.

Bio::Tools::Analysis::Protein::Mitoprot

Wrapper around Mitoprot server.

Bio::Tools::Run::Genewise

Object for predicting genes in a given sequence given a protein.

Bio::Tools::Run::Tmhmm

Object for identifying transmembrane helixes in a given protein seequence.

Bio::SeqFeature::Gene::GeneStructure

A feature representing an arbitrarily complex structure of a gene.

GO::AnnotationProvider::AnnotationParser

Parses a gene annotation file.

Bio::SAGE::Comparison

Compares data from serial analysis of gene expression (SAGE) libraries.